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matlab function 'mafdr  (MathWorks Inc)


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    MathWorks Inc matlab function 'mafdr
    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
    Matlab Function 'Mafdr, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Hierarchy between forelimb premotor and primary motor cortices and its manifestation in their firing patterns"

    Article Title: Hierarchy between forelimb premotor and primary motor cortices and its manifestation in their firing patterns

    Journal: eLife

    doi: 10.7554/eLife.103069

    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null hypotheses that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
    Figure Legend Snippet: ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null hypotheses that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.

    Techniques Used: Modification, Control

    Related Articles

    Generated:

    Article Title: When the Whole Is Less Than the Sum of Its Parts: Maximum Object Category Information and Behavioral Prediction in Multiscale Activation Patterns
    Article Snippet: .. The correlation was considered significant if surpassed 95% of the randomly generated correlations in the null distribution in either positive or negative directions ( p < 0.05) and the p -values were corrected for multiple comparisons across time using Matlab mafdr function, where the algorithm fixes the rejection region and then estimates its corresponding error rate resulting in increased accuracy and power ( ). ..

    other:

    Article Title: Spatiotemporal analysis of category and target-related information processing in the brain during object detection.
    Article Snippet: Next, to correct the results for multiple comparisons, we applied an FDR correction (using Matlab mafdr function which used the Story’s method; Storey, 2002) and considered the final p-values as significant if they were lower than 0.05.

    Transformation Assay:

    Article Title: Carbon Sources Tune Antibiotic Susceptibility in Pseudomonas aeruginosa via Tricarboxylic Acid Cycle Control
    Article Snippet: .. To quantify significant changes in metabolite abundance between conditions, Welch’s two-sample t test was performed on log 2 -transformed relative concentration measurements; the MATLAB mafdr function was used to correct for multiple hypothesis testing using the Storey method ( Storey and Tibshirani, 2003 ). ..

    Concentration Assay:

    Article Title: Carbon Sources Tune Antibiotic Susceptibility in Pseudomonas aeruginosa via Tricarboxylic Acid Cycle Control
    Article Snippet: .. To quantify significant changes in metabolite abundance between conditions, Welch’s two-sample t test was performed on log 2 -transformed relative concentration measurements; the MATLAB mafdr function was used to correct for multiple hypothesis testing using the Storey method ( Storey and Tibshirani, 2003 ). ..



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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
    Matlab Function 'Mafdr, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null <t>hypotheses</t> that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.
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    ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null hypotheses that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.

    Journal: eLife

    Article Title: Hierarchy between forelimb premotor and primary motor cortices and its manifestation in their firing patterns

    doi: 10.7554/eLife.103069

    Figure Lengend Snippet: ( A ), ( B ) Histograms of waveform widths for recorded neurons in CFA ( A ) and RFA ( B ), showing the bimodal distribution of narrow and wide waveforms. Dotted line shows the threshold above which neurons were considered wide waveform. ( C )-( F ) Histograms of p-values from our modified version of SALT for narrow-waveform neurons recorded in one session ( C,E ) or all sessions ( D,F ) in either CFA ( C,D ) or RFA ( E,F ) while inactivating the other region. The uniformity of these distributions indicates an absence of appreciable violation of the null hypotheses that neurons are not directly activated by light. ( G )-( N ) Mean firing rate ± SEM for wide-waveform ( G–J ) or narrow-waveform ( K–N ) neurons for one animal ( G,I,K,M ) or three animals ( H,J,L,N ) recorded in CFA ( G,H,K,L ) or RFA ( I,J,M,N ) while inactivating the other region. Averages combining cells from multiple animals used the same number of cells from each animal. The cyan rectangle indicates when the light was applied. ( O )-( R ) Mean absolute firing rate change ± SEM between control and inactivation trials ( O,Q ) and mean absolute firing rate difference between control and inactivation trials averaged from 10ms after light/trial onset to 25, 50, or 100ms afterwards ( P,R ) for wide- and narrow-waveform neurons recorded in CFA ( O,P ) or RFA ( Q,R ) during inactivation of the other region. Black bars show mean across animals. ( T )-(AA) Mean firing rate ± SEM for all three animals recorded in CFA ( T,U,X,Y ) or RFA ( V,W,Z,AA ) while inactivating the other region, either for two separate sessions ( T–W ) or the first and second half of trials from all sessions ( X–AA ). The cyan rectangle indicates when the light was applied. Average inactivation effects show remarkable consistency, both within and across sessions.

    Article Snippet: From distributions of p-values calculated as described below for each metric, we estimated the fraction of false null hypotheses as one minus an estimate of the a prior i fraction of true null hypotheses ( ) (MATLAB function ‘mafdr’).

    Techniques: Modification, Control